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1

Engineering Agatoxin, a Cystine-Knot Peptide from Spider Venom, as a Molecular Probe for In Vivo Tumor Imaging

Moore, Sarah J., Leung, Cheuk Lun, Norton, Heidi K., Cochran, Jennifer R., Bogyo, Matthew

Journal:

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

2

A Mild Chemically Cleavable Linker System for Functional Proteomic Applications

Steven H. L. Verhelst, Marko Fonović, Matthew Bogyo

Journal:

Angewandte Chemie

Year:

2007

Language:

english

File:

PDF, 165 KB

english, 2007

3

Friend or Foe? Turning a Host Defense Protein Into a Pathogen's Accomplice

Aimee Shen, Matthew Bogyo

Journal:

Chemistry & Biology

Year:

2008

Language:

english

File:

PDF, 262 KB

english, 2008

4

Activity-Based Profiling of Proteases

Sanman, Laura E., Bogyo, Matthew

Journal:

Annual Review of Biochemistry

Year:

2014

Language:

english

File:

PDF, 1.85 MB

english, 2014

5

Chemical Strategies To Target Bacterial Virulence

Garland, Megan, Loscher, Sebastian, Bogyo, Matthew

Journal:

Chemical Reviews

Year:

2017

Language:

english

File:

PDF, 4.77 MB

english, 2017

6

New Blood Test SEEKs To Detect and Localize Cancer before It’s Too Late

Bogyo, Matthew, Yim, Joshua J., Rosenthal, Eben L.

Journal:

Year:

2018

Language:

english

File:

PDF, 247 KB

english, 2018

7

Characterization of Serine Hydrolases Across Clinical Isolates of Commensal Skin Bacteria Staphylococcus epidermidis Using Activity-Based Protein Profiling

Keller, Laura J., Lentz, Christian S., Chen, Y. Erin, Metivier, Rebecca J., Weerapana, Eranthie, Fischbach, Michael A., Bogyo, Matthew

Journal:

ACS Infectious Diseases

Year:

2020

File:

PDF, 1.97 MB

2020

8

Strategies for Tuning the Selectivity of Chemical Probes that Target Serine Hydrolases

Faucher, Franco, Bennett, John M., Bogyo, Matthew, Lovell, Scott

Journal:

Cell Chemical Biology

Year:

2020

File:

PDF, 3.80 MB

2020

9

Biochemical screening for SARS-CoV-2 main protease inhibitors

Coelho, Camila, Gallo, Gloria, Campos, Claudia B., Hardy, Leon, WÃ¼rtele, Martin, Bogyo, Matthew

Journal:

Year:

2020

File:

PDF, 1.42 MB

2020

10

Structural Basis for the Inhibitor and Substrate Specificity of the Unique Fph Serine Hydrolases of Staphylococcus aureus

Fellner, Matthias, Lentz, Christian S., Jamieson, Sam A., Brewster, Jodi L., Chen, Linhai, Bogyo, Matthew, Mace, Peter D.

Journal:

ACS Infectious Diseases

Year:

2020

File:

PDF, 5.40 MB

2020

11

Proteasome inhibitors and antigen presentation

Matthew Bogyo, Maria Gaczynska, Hidde L. Ploegh

Journal:

Year:

1997

Language:

english

File:

PDF, 244 KB

english, 1997

12

Handbook of Proteomic Methods. Von P. Michael Conn.

Evelyn W. Wang, Matthew S. Bogyo

Journal:

Angewandte Chemie

Year:

2004

Language:

german

File:

PDF, 65 KB

german, 2004

13

Handbook of Proteomic Methods. By P. Michael Conn.

Evelyn W. Wang, Matthew S. Bogyo

Journal:

Angewandte Chemie International Edition

Year:

2004

Language:

english

File:

PDF, 86 KB

english, 2004

14

A Mild Chemically Cleavable Linker System for Functional Proteomic Applications

Steven H. L. Verhelst, Marko Fonović, Matthew Bogyo

Journal:

Angewandte Chemie International Edition

Year:

2007

Language:

english

File:

PDF, 166 KB

english, 2007

15

Small-Molecule Inhibitors and Probes for Ubiquitin- and Ubiquitin-Like-Specific Proteases

Anna Borodovsky, Huib Ovaa, Wim J. N. Meester, Emily S. Venanzi, Matthew S. Bogyo, Brian G. Hekking, Hidde L. Ploegh, Benedikt M. Kessler, Herman S. Overkleeft

Journal:

Year:

2005

Language:

english

File:

PDF, 182 KB

english, 2005

16

Solid-Phase Synthesis of Double-Headed Epoxysuccinyl Activity-Based Probes for Selective Targeting of Papain Family Cysteine Proteases

Steven H. L. Verhelst, Matthew Bogyo

Journal:

Year:

2005

Language:

english

File:

PDF, 148 KB

english, 2005

17

Novel Aza Peptide Inhibitors and Active-Site Probes of Papain-Family Cysteine Proteases

Steven H. L. Verhelst, Martin D. Witte, Shirin Arastu-Kapur, Marko Fonovic, Matthew Bogyo

Journal:

Year:

2006

Language:

english

File:

PDF, 300 KB

english, 2006

18

A Fragmenting Hybrid Approach for Targeted Delivery of Multiple Therapeutic Agents to the Malaria Parasite

Dr. Sumit S. Mahajan, Dr. Edgar Deu, Dr. Erica M. W. Lauterwasser, Melissa J. Leyva, Prof. Dr. Jonathan A. Ellman, Prof. Dr. Matthew Bogyo, Prof. Dr. Adam R. Renslo

Journal:

Year:

2011

Language:

english

File:

PDF, 356 KB

english, 2011

19

Inside Cover: A Fragmenting Hybrid Approach for Targeted Delivery of Multiple Therapeutic Agents to the Malaria Parasite (ChemMedChem 3/2011)

Dr. Sumit S. Mahajan, Dr. Edgar Deu, Dr. Erica M. W. Lauterwasser, Melissa J. Leyva, Prof. Dr. Jonathan A. Ellman, Prof. Dr. Matthew Bogyo, Prof. Dr. Adam R. Renslo

Journal:

Year:

2011

Language:

english

File:

PDF, 475 KB

english, 2011

20

Evaluation of α,β-unsaturated ketone-based probes for papain-family cysteine proteases

Zhimou Yang, Marko Fonović, Steven H.L. Verhelst, Galia Blum, Matthew Bogyo

Journal:

Bioorganic & Medicinal Chemistry

Year:

2009

Language:

english

File:

PDF, 264 KB

english, 2009

21

Development of activity-based probes for trypsin-family serine proteases

Zhengying Pan, Douglas A. Jeffery, Kareem Chehade, Jerlyn Beltman, James M. Clark, Paul Grothaus, Matthew Bogyo, Amos Baruch

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2006

Language:

english

File:

PDF, 152 KB

english, 2006

22

Design of cell-permeable, fluorescent activity-based probes for the lysosomal cysteine protease asparaginyl endopeptidase (AEP)/legumain

Kelly B. Sexton, Martin D. Witte, Galia Blum, Matthew Bogyo

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2007

Language:

english

File:

PDF, 452 KB

english, 2007

23

Design, syntheses, and evaluation of Taspase1 inhibitors

Jeong Tae Lee, David Y. Chen, Zhimou Yang, Alexander D. Ramos, James J.-D. Hsieh, Matthew Bogyo

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2009

Language:

english

File:

PDF, 906 KB

english, 2009

24

Tagging and detection strategies for activity-based proteomics

Amir M Sadaghiani, Steven HL Verhelst, Matthew Bogyo

Journal:

Current Opinion in Chemical Biology

Year:

2007

Language:

english

File:

PDF, 505 KB

english, 2007

25

Genomics and proteomics: From genes to function: advances in applications of chemical and systems biology

Matthew Bogyo, Benjamin F Cravatt

Journal:

Current Opinion in Chemical Biology

Year:

2007

Language:

english

File:

PDF, 84 KB

english, 2007

26

Design, Synthesis, and Evaluation of In Vivo Potency and Selectivity of Epoxysuccinyl-Based Inhibitors of Papain-Family Cysteine Proteases

Amir Masoud Sadaghiani, Steven H.L. Verhelst, Vasilena Gocheva, Kimberly Hill, Eva Majerova, Sherman Stinson, Johanna A. Joyce, Matthew Bogyo

Journal:

Chemistry & Biology

Year:

2007

Language:

english

File:

PDF, 1.42 MB

english, 2007

27

Hemoglobin Digestion in Blood-Feeding Ticks: Mapping a Multipeptidase Pathway by Functional Proteomics

Martin Horn, Martina Nussbaumerová, Miloslav Šanda, Zuzana Kovářová, Jindřich Srba, Zdeněk Franta, Daniel Sojka, Matthew Bogyo, Conor R. Caffrey, Petr Kopáček, Michael Mareš

Journal:

Chemistry & Biology

Year:

2009

Language:

english

File:

PDF, 1.07 MB

english, 2009

28

Functional Studies of Plasmodium falciparum Dipeptidyl Aminopeptidase I Using Small Molecule Inhibitors and Active Site Probes

Edgar Deu, Melissa J. Leyva, Victoria E. Albrow, Mark J. Rice, Jonathan A. Ellman, Matthew Bogyo

Journal:

Chemistry & Biology

Year:

2010

Language:

english

File:

PDF, 2.37 MB

english, 2010

29

Rational Design of Inhibitors and Activity-Based Probes Targeting Clostridium difficile Virulence Factor TcdB

Aaron W. Puri, Patrick J. Lupardus, Edgar Deu, Victoria E. Albrow, K. Christopher Garcia, Matthew Bogyo, Aimee Shen

Journal:

Chemistry & Biology

Year:

2010

Language:

english

File:

PDF, 1.32 MB

english, 2010

30

Development of Small Molecule Inhibitors and Probes of Human SUMO Deconjugating Proteases

Victoria E. Albrow, Elizabeth L. Ponder, Domenico Fasci, Miklós Békés, Edgar Deu, Guy S. Salvesen, Matthew Bogyo

Journal:

Chemistry & Biology

Year:

2011

Language:

english

File:

PDF, 1.15 MB

english, 2011

31

Epoxide electrophiles as activity-dependent cysteine protease profiling and discovery tools

Doron Greenbaum, Katalin F Medzihradszky, Alma Burlingame, Matthew Bogyo

Journal:

Chemistry & Biology

Year:

2000

Language:

english

File:

PDF, 717 KB

english, 2000

32

Substrate binding and sequence preference of the proteasome revealed by active-site-directed affinity probes

Matthew Bogyo, Sunny Shin, John S. McMaster, Hidde L. Ploegh

Journal:

Chemistry & Biology

Year:

1998

Language:

english

File:

PDF, 3.63 MB

english, 1998

33

Proteomics and genomics

Matthew Bogyo, James H Hurley

Journal:

Current Opinion in Chemical Biology

Year:

2003

Language:

english

File:

PDF, 42 KB

english, 2003

34

Cathepsin B trafficking in thyroid carcinoma cells

Sofia Tedelind, Silvia Jordans, Henrike Resemann, Galia Blum, Matthew Bogyo, Dagmar Führer, Klaudia Brix

Journal:

Thyroid Research

Year:

2011

Language:

english

File:

PDF, 6.50 MB

english, 2011

35

Dissecting Protein Function Using Chemical Proteomic Methods

Steven H. L. Verhelst, Matthew Bogyo

Journal:

Molecular Informatics

Year:

2005

Language:

english

File:

PDF, 186 KB

english, 2005

36

Chemical proteomics and its application to drug discovery

Douglas A Jeffery, Matthew Bogyo

Journal:

Current Opinion in Biotechnology

Year:

2003

Language:

english

File:

PDF, 169 KB

english, 2003

37

Selective targeting of lysosomal cysteine proteases with radiolabeled electrophilic substrate analogs

Matthew Bogyo, Steven Verhelst, Valerie Bellingard-Dubouchaud, Sam Toba, Doron Greenbaum

Journal:

Chemistry & Biology

Year:

2000

Language:

english

File:

PDF, 582 KB

english, 2000

38

Probing Structural Determinants Distal to the Site of Hydrolysis that Control Substrate Specificity of the 20S Proteasome

Michael Groll, Tamim Nazif, Robert Huber, Matthew Bogyo

Journal:

Chemistry & Biology

Year:

2002

Language:

english

File:

PDF, 399 KB

english, 2002

39

Small Molecule Affinity Fingerprinting: a Tool for Enzyme Family Subclassification, Target Identification, and Inhibitor Design

Doron C Greenbaum, William D Arnold, Felice Lu, Linda Hayrapetian, Amos Baruch, Jennifer Krumrine, Samuel Toba, Kareem Chehade, Dieter Brömme, Irwin D Kuntz, Matthew Bogyo

Journal:

Chemistry & Biology

Year:

2002

Language:

english

File:

PDF, 550 KB

english, 2002

40

Targeted disruption of Plasmodium falciparum cysteine protease, falcipain 1, reduces oocyst production, not erythrocytic stage growth

Saliha Eksi, Beata Czesny, Doron C. Greenbaum, Matthew Bogyo, Kim C. Williamson

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 141 KB

english, 2004

41

Minitags for small molecules: detecting targets of reactive small molecules in living plant tissues using ‘click chemistry’

Farnusch Kaschani, Steven H. L. Verhelst, Paul F. Van Swieten, Martijn Verdoes, Chung-Sing Wong, Zheming Wang, Markus Kaiser, Herman S. Overkleeft, Matthew Bogyo, Renier A. L. Van Der Hoorn

Journal:

The Plant Journal

Year:

2009

Language:

english

File:

PDF, 912 KB

english, 2009

42

Proteomics meets microbiology: technical advances in the global mapping of protein expression and function

Carolyn I. Phillips, Matthew Bogyo

Journal:

Cellular Microbiology

Year:

2005

Language:

english

File:

PDF, 208 KB

english, 2005

43

Autocatalytic processing of procathepsin B is triggered by proenzyme activity

Jerica Rozman Pungerčar, Dejan Caglič, Mohammed Sajid, Marko Dolinar, Olga Vasiljeva, Urška Požgan, Dušan Turk, Matthew Bogyo, Vito Turk, Boris Turk

Journal:

Year:

2009

Language:

english

File:

PDF, 284 KB

english, 2009

44

10.1038/25238

Bogyo, Matthew, Ploegh, Hidde L.

Journal:

Year:

1998

Language:

english

File:

PDF, 333 KB

english, 1998

45

10.1038/33443

Ploegh, Hidde L., Glas, Rickard, Bogyo, Matthew, McMaster, John S., Gaczynska, Maria

Journal:

Year:

1998

Language:

english

File:

PDF, 383 KB

english, 1998

46

Sec6l-mediated transfer of a membrane protein from the endoplasmic reticulum to the proteasome for destruction

Wiertz, Emmanuel J. H. J., Tortorella, Domenico, Bogyo, Matthew, Yu, Joyce, Mothes, Walther, Jones, Thomas R., Rapoport, Tom A., Ploegh, Hidde L.

Journal:

Year:

1996

File:

PDF, 1.84 MB

1996

47

Mechanistic and structural insights into the proteolytic activation of Vibrio cholerae MARTX toxin

Shen, Aimee, Lupardus, Patrick J, Albrow, Victoria E, Guzzetta, Andrew, Powers, James C, Garcia, K Christopher, Bogyo, Matthew

Journal:

Nature Chemical Biology

Year:

2009

Language:

english

File:

PDF, 830 KB

english, 2009

48

Noninvasive optical imaging of cysteine protease activity using fluorescently quenched activity-based probes

Blum, Galia, von Degenfeld, Georges, Merchant, Milton J, Blau, Helen M, Bogyo, Matthew

Journal:

Nature Chemical Biology

Year:

2007

Language:

english

File:

PDF, 1.91 MB

english, 2007

49

Identification of proteases that regulate erythrocyte rupture by the malaria parasite Plasmodium falciparum

Arastu-Kapur, Shirin, Ponder, Elizabeth L, Fonović, Urša Pečar, Yeoh, Sharon, Yuan, Fang, Fonović, Marko, Grainger, Munira, Phillips, Carolyn I, Powers, James C, Bogyo, Matthew

Journal:

Nature Chemical Biology

Year:

2008

Language:

english

File:

PDF, 497 KB

english, 2008

50

Metabolomics cuts to the chase to chase the cuts

Journal:

Nature Chemical Biology

Year:

2009

Language:

english

File:

PDF, 1020 KB

english, 2009

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